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Scientific Python
Community developed and owned ecosystem for scientific computing
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Home | Open Microscopy Environment (OME)
The Open Microscopy Environment (OME) is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
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scikit-image: Image processing in Python — scikit-image
scikit-image is a collection of algorithms for image processing. It is available free of charge and free of restriction. We pride ourselves on high-quality, peer-reviewed code, written by an active community of… · release, version, image, free, 2024
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Biopython · Biopython
Python Tools for Computational Molecular Biology Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort… · biopython, python, tools, available, libraries
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Colour Science for Python | Colour Science
Colour
is an open-source Python
package providing a comprehensive number of algorithms and datasets
for colour science.
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python.engineering
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Introduction — Proteus 1.8.1 documentation
Proteus is a Python package for rapidly developing computer models and numerical methods. It is focused on models of continuum mechanical processes described by partial differential equations and on discretizations and… · proteus, methods, numerical, models, equations
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Python Graph Gallery
The Python Graph Gallery displays hundreds of charts made with Python, always with explanation and reproduciible code
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nextPYP
A scalable platform for single-particle cryo-EM/ET image analysis nextPYP is an open-source, end-to-end platform for high-resolution single-particle cryo-EM/ET image analysis Analyze micrographs and tilt-series in… · particle, based, single, learn, platform
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MicroStructPy - Microstructure Mesh Generation in Python — MicroStructPy
Microstructure modeling, mesh generation, analysis, and visualization.
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DIPY — Diffusion Imaging in Python documentation
An open-source, user-friendly and growing imaging library for 3D/4D+ imaging. All the algorithms are available using CLI. You can also create your own algorithms. DIPY allows you to use different methods like BUAN, AFQ… · registration, tracking, imaging, algorithms, shell
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diplib.org
Quantitative Image Analysis in C++, MATLAB and Python The purpose of the DIPlib project is to provide a one-stop library and development environment for quantitative image analysis, be it applied to microscopy… · diplib, image, quantitative, analysis, matlab
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Scientific Python - Scientific User-Developers
A place for the Scientific Python community of users and developers to talk
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Learn -
Documentation for the Scientific Python community.
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Tools -
Tools and services for scientific Python developers and packages.
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Microscopy Image Analysis Software - Imaris - Oxford Instruments
Imaris is the world leading interactive microscopy image analysis software used by microscopists around the world.
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Microscopy Image Analysis Software - Imaris - Oxford Instruments
Imaris is the world leading interactive microscopy image analysis software used by microscopists around the world.
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Microscopy Image Browser, image segmentation and beyond
Welcome to the home page of Microscopy Image Browser
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mumott — mumott documentation
A Python library for the analysis of photon probe tensor tomography data
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Cours de Python
Introduction à la programmation Python pour la biologie Patrick Fuchs et Pierre Poulain prénom [point] nom [arobase] u-paris [point] fr · programmation, python, pour, point, les
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PhasorPy homepage
Welcome to the homepage of the PhasorPy project. PhasorPy is an open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach. The PhasorPy documentation… · phasorpy, source, library, welcome, homepage
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Python for biologists – python for biologists
A complete guide to cleaning, manipulating and visualizing complex biological datasets with Python A complete guide to cleaning, manipulating and visualizing complex biological datasets with Python · complete, guide, cleaning, manipulating, visualizing
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Cours de Python
Introduction à la programmation Python pour la biologie Patrick Fuchs et Pierre Poulain prénom [point] nom [arobase] u-paris [point] fr · programmation, python, pour, point, les
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DiffPy - Atomic Structure Analysis in Python — DiffPy documentation
A free and open source software project to provide python software for diffraction analysis and the study of the atomic structure of materials. DiffPy is the home of the DiffPy-CMI Complex Modeling framework, a modular… · project, software, diffraction, provide, analysis
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practicalpythonfordatascience.com
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Python Microscope
Microscope is a Python package for the control of automated microscopes. It is easy to use and especially well suited for complex microscopes with hard timing requirements.
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gmxapi Python package - GROMACS 2025.4 documentation
gmxapi allows molecular simulation and analysis work to be staged and run from Python. After installing GROMACS and the gmxapi Python package, you can use pydoc gmxapi from the command line or import gmxapi; help(gmxapi)… · gmxapi, gromacs, python, molecular, documentation
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Welcome to Gradientzoo’s documentation! — Gradientzoo 0.8.8 documentation
© Copyright 2016, Eric Florenzano. Revision 6eeed8a8. · 2016, eric, florenzano, revision, 6eeed8a8
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Python für Ingenieure für dummies
Ingenieurprobleme Lösen mit der einfachen und mächtigen Programmiersprache Python: Kurven fitten, Systeme simulieren, Diagramme zeichnen, Spektren berechnen u.v.m. Hier gibt's das Begleitmaterial zum Buch.
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Microscopy Bioscience Platform | School of the Biological Sciences
The Microscopy Bioscience Platform provides cutting-edge microscopy resources in the School of Biological Sciences.
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ePMV – the embedded Python Molecular Viewer
Welcome to ePMV
The open-source uPy plugin, embedded Python Molecular Viewer (ePMV) runs molecular-modeling software directly in several professional 3D animation applications (hosts). Uniting host and scientific software in a single interface allows users from varied backgrounds to assemble
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Корпоративные курсы Python в Big Data и Machine Learning
Практические курсы по Python в Big Data и Machine Learning в специализированном учебном центре корпоративного обучения - сертификат гособразца, Москва
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WOSM
The WOSM (Warwick Open Source Microscope) is a super-stable physical platform and control interface for high and super resolution optical microscopy. Our idea was to make something as solid and as optically… · source, microscope, control, eduwosm, wosm
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WOSM
The WOSM (Warwick Open Source Microscope) is a super-stable physical platform and control interface for high and super resolution optical microscopy. Our idea was to make something as solid and as optically… · source, microscope, control, wosm, super
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data-analysis-in-python.org
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Welsher Lab @ Duke University - Pushing the spatial, temporal, and spectral limits of microscopy to interrogate complex systems
Pushing the spatial, temporal, and spectral limits of microscopy to interrogate complex systems
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Python for scientific instrument control | Python For The Lab
We are experts at controlling scientific instruments with Python. From labs to companies that want to bring their software to the next level.
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virtual microscopy
Microscopie virtuelle / Virtuelle Mikroskopie © Plateforme pédagogique d'histologie, Université de Fribourg © Chaire de Pathologie, Université de Fribourg · université, fribourg, virtuelle, plateforme, pédagogique
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Python in the Lab